Glyma20g28460 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g28460

Feature Type:	gene_model
Chromosome:	Gm20
Start:	37373414
stop:	37375735
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g28460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22640	AT	Annotation by Michelle Graham. TAIR10: cupin family protein \| chr3:8011902-8013883 REVERSE LENGTH=486	SoyBase	E_val: 2.00E-70	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF00190	PFAM	Cupin	JGI		ISS
UniRef100_F7J077	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-conglycinin beta subunit n=2 Tax=Glycine max RepID=F7J077_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1NGF4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NGF4_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma20g28460

Locus	Gene Symbol	Protein Name
	Cgy4	beta-conglycinin beta-subunit 4

Expression Patterns of Glyma20g28460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g28460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g146200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g28460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g28460

Limit To All Plant Sequences

>Glyma20g28460.1   sequence type=CDS   gene model=Glyma20g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGAGTGCGGTTTCCTTTGTTGGTGTTGCTGGGAACTGTTTTCCTGGCATCAGTTTGTGTCTCATTAAAGGTGAGAGAGGATGAGAATAACCCTTTCTACTTGAGAAGCTCTAACAGCTTCCAAACTCTCTTTGAGAACCAAAACGGTCGCATTCGTCTCCTCCAGAGATTCAACAAACGCTCCCCACAACTTGAGAACCTTCGAGACTACCGGATTGTCCAGTTTCAGTCAAAACCCAACACAATCCTTCTCCCCCACCATGCTGACGCCGATTTCCTCCTCTTTGTCCTTAGCGGGAGAGCCATACTTACCTTGGTGAACAACGACGACAGAGACTCCTACAACCTTCACCCTGGCGATGCCCAGAGAATCCCAGCTGGAACCACTTACTATTTGGTTAACCCTCACGACCACCAGAATCTCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTCAGCCATAATATTCTAGAGACCTCCTTCCATAGCGAATTCGAGGAGATAAACAGGGTTTTGTTTGGAGAGGAAGAGGAGCAGAGGCAGCAAGAGGGAGTGATCGTGGAACTCTCAAAGGAACAAATTCGGCAACTGAGCAGACGTGCCAAATCTAGTTCAAGGAAAACCATTTCCTCCGAAGATGAACCATTCAACTTGAGAAGCCGCAACCCCATCTATTCCAACAACTTTGGAAAGTTCTTTGAGATCACCCCTGAGAAAAACCCACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAAGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTGATTAATGAAGGAGATGCAAACATTGAACTTGTTGGCATTAAAGAACAACAACAGAAGCAGAAACAGGAAGAGGAACCTTTGGAAGTGCAAAGGTACAGAGCTGAATTGTCTGAAGACGATGTATTTGTAATTCCAGCAGCTTATCCATTTGTCGTCAACGCTACCTCAAACCTCAATTTCCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGCGTTCCCTGGGTCTGCACAAGATGTTGAGAGGCTATTAAAGAAGCAGAGGGAATCCTACTTTGTTGATGCTCAGCCTCAGCAGAAGGAGGAGGGGAGTAAGGGAAGAAAGGGTCCTTTTCCTTCAATCTTAGGTGCTCTCTACTGA

Predicted protein sequences of Glyma20g28460

Limit To All Plant Sequences

>Glyma20g28460.1   sequence type=predicted peptide   gene model=Glyma20g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMRVRFPLLVLLGTVFLASVCVSLKVREDENNPFYLRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDAQPQQKEEGSKGRKGPFPSILGALY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain